Structure of PDB 6z1p Chain Bq Binding Site BS03

Receptor Information
>6z1p Chain Bq (length=176) Species: 312017 (Tetrahymena thermophila SB210) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSVWNLLNPIRNGATGLKLLSSGRELFGTVIQHGKMDKTVTVKVDYRYWY
PKTKEFKSKTSKYQVHDSENFCVTGDKVVIKSMLPISTMKHYYVRNIVKP
FPRDTYYKEGQEQLKKEYQRLYQEFYEREQQRTEIKNKKDEVTLKSALKA
KALTRAMANLRKVESTQKKKDKVVAA
Ligand information
>6z1p Chain Bb (length=1385) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uguuuacagcuuaaagauuauuuuguacaauauuagguaauuauuucuaa
aacuguuuaauaauauuauuuuuaguaaaauaagccuagauguuuaguug
aauuuagagauuguucaaccacauacggguaugaaaacuacccuaucuuu
uugacagcagugaggaauuuuggacaauaugcgaaagcaugauccagcga
acuaauggaaacgaagaagauagcaauauuguaaaguuuagugcgagaau
uaacaaaugaguaaauucuaggagaagcucuggcuaauacaugugccagc
agccgcgguaauacaugaggagcaagcguuacccacauugacugggugua
uuaaauacauaggugauuacaaauacuacuuuaaaagucaauuaaaaacc
uaauauaguaguuuuuuuguaaaugauaauuaaauauaaggauaggagau
uuauagaacaacgauuaaauguaguuacacuauagagcuugccauaaacu
aaggugcuuuccuauauuuaauuauagcugauguaugaaaguacggggau
cgauaaggauuaguuucccuaguaguccguacuguaaaagaugaauacuu
caugaauuaaauauucagggauagcuaacgcaaaguauucuacucgggga
guauaaucgcaagauuaaaacuuaacugaauuggcgggaauuuguucgaa
cgguggaacaugugguuuaaugcgauaauccacgcaaaaucuuaccaacg
uuucaggcuuuaucaguaguaugauuaauaucaaaauuauaugauuuagu
acggaauugcauggcugucgucaguucgugcugugaaguuuaggauuaag
uucuuuuuaacgaaugcaacccuauaaguaaguuuuuauuuuaaaauaac
uuaauuuuuuaaauauacuuauuuaaucuauaauuagaauauauugaauc
uauucuguauauucuuuuauagggguuauaggcugaagucaagucccuau
ggucuuuauacguugggcuacacacguguuacaaggguaaauacaaaaag
acgcaaaaaaguaauuuugagcaaaccuuuaaaaauuaccuuaguucaga
uuguuuuaugaaauucuaaaacaugaagaugaaaucguuaguaauuguaa
auuauuauguuacagugaaacaauagucaaauuuugcacacaccgcccau
cacgcucggaaagucaauaauagcggaagauuugaaaaacucugcgcaaa
acuaauauuauuuuuauauuaguuggcauuauauuauuuuuuaauggcau
gguugaaaaguaguauccaaucuaguauugguaauuugagugaaguugac
acaagguacugguaggggaaccuguugguggaaua
............................<<<....<<<..<<<<<<<<<<
<.......<<<<....>>>>>>>>>..>>>>>>>>>.....>>>..<<<<
<<<<....>>>>...>>>>....<<.<<<<.........>>>>>><<...
..>>.................<<<...<<<<<....>>>>.>>>>.....
........<<<<......<<<<....>>>>.....>>>>......<<<<<
..<........>..>>>>>.......<<<<<(((.....<<<<.....<<
.)))>>.......>>>>.>>>>>.....................<<<((.
....<<<<<..<<<.<<<<<<<<..<<<<<.<<.................
...>>.>>>>>....>>>>>>.>>..<<<<<<<<<<<.<<<<.<<<<<.<
<<<<<<....<<<......>>>.......>>>>>>.>>>>.......<<.
...>>.>>.>>>>>>>>>>>>>>>..>>>..>>>>>...<<<<<<<<...
<....<<<.........>>>....>>>>>>>>>.........<<<<<<.<
<.<<<<.......>>>>..>>..<<..))>>...>>>>>>.>>>.<<<..
...<<<<<....>>>>>...>>>.........<<<<.<<<<<<<.....<
<<<<..<<<<<<<<<<......<<........>>..........<<<<<<
<.....<<<..<<<..<<<..<<<<....>>>>...>>>...>>>..>>>
..<<.<<<..<<<<<<.......<<<<<<<<<....>>>...<<<.....
.>>>.....>>>>>>.....<<<.<<<<<<<<....<<<<<.<<<<....
.....>>>>.>>>>>..>>>>>>>>..<<<<<<...<<<<<<<<.<<...
...>>.>>>>>>>>..>>>>>>.......>>>.........>>>...>>>
>>>>>....>>>>>>>...>>.>>>>>>>>.....<<<<<.<....<<<<
..<<..<<<<....>>>>..>>....>>>>....>>>>>>......<...
.<<<<<<<........>>>>>>>....>.....>>>>>.....<<<<<<<
.........>>>>>>>...........>>>>>>>>>>.>........<<.
<.<<<<<<<<..<<<<<<<.<<<.....<<<.<......<.<<<.<<..<
<<<<<<<<.......>>>>>>>>>.......<...........>..>>.>
>>..>.......>.>>>....>>>.>>>>>>>..>>>>>>>>..>.>>..
.......<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z1p Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		S2 L7 I11 R12 N13 T16 Q33 K36 M37 Y47 P52 K53 K55 S59 K60 T61 K63 Y64 Q65 S88 T89 M90 K91 H92 N144 K145 V149
Binding residue
(residue number reindexed from 1)		S1 L6 I10 R11 N12 T15 Q32 K35 M36 Y46 P51 K52 K54 S58 K59 T60 K62 Y63 Q64 S87 T88 M89 K90 H91 N137 K138 V142
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6z1p, PDBe:6z1p, PDBj:6z1p
PDBsum6z1p
PubMed32553108
UniProtI7M6C7

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