Structure of PDB 8yfq Chain B Binding Site BS03

Receptor Information

>8yfq Chain B (length=1146) Species: 460519 (Komagataella phaffii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DDTITTEDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLIL
INKRYEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDME
KSMFTSIDGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGGYF
VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLIST
MQIKLYGREDKGTGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHIC
YDENDWQMLEMLKPCIEEGFVIQDKEVALDFIGRRGSAALGIRREKRIQY
AKDILQKELLPHITQEEGFETRKTFFLGYMVNRLLLCALERKDQDDRDHF
GKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETDRDFNLNLAVKST
TITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP
IGLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPII
NFLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRR
SGAISPEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRIT
KEHIRKIQQGYDDDEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDL
QTRSLNDTAKRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQS
PRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLAKTQAMEYLKF
RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEK
RFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGVRVSGDDIIIGK
TTPIPHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQI
GDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHL
IECLLSKVGSIRGYEGDATPFTDLTVDAVSNLLRDNGYQSRGFEVMYNGH
TGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDG
GLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICGLMSVIANLK
KNQFECRSCKNKTNIYQLHIPYAAKLLFQELMAMNIAPRLYTERSG

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8yfq Chain B Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8yfq Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
Resolution	3.3 Å
Binding residue (original residue number in PDB)	C1163 C1166 C1182 C1185
Binding residue (residue number reindexed from 1)	C1087 C1090 C1106 C1109
Annotation score	1

External links

PDB	RCSB:8yfq, PDBe:8yfq, PDBj:8yfq
PDBsum	8yfq
PubMed	39245712
UniProt	C4QZQ7

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