Structure of PDB 8slg Chain B Binding Site BS03

Receptor Information

>8slg Chain B (length=447) Species: 1078020 (Mycolicibacterium thermoresistibile ATCC 19527)

ASIIDTVANLAKRRGFVYQSGEIYGGTRSAWDYGPLGVELKENIKRQWWK
SMVTAREDVVGIDTSIILPREVWVASGHVDVFHDPLVECLNCHRRHRQDH
LQEVPMDEVVCPDCGTKGRWTEPREFNMMLKTYLGPIESDEGLHYLRPET
AQGIFTNFANVVTTARKKPPFGIAQTGKSFRNEITPGNFIFRTREFEQME
MEFFVEPSTAKEWHQYWIDTRLQWYVDLGIDRDNLRLYEHPPEKLSHYAE
RTVDIEYKYGFAGDPWGELEGIANRTDFDLSTHSKHSGVDLSYYDQATDT
RYVPYVIEPAAGLTRSLMAFLIDAYSEDEAPNAKGGVDKRTVLRFDPRLA
PVKVAVLPLSRHADLSPKARDLAAELRQHWNVEFDDAGAIGRRYRRQDEV
GTPYCVTVDFDSLEDNAVTVRERDSMAQERISIDQVTDYLAVRLKGC

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 8slg Chain B Residue 506

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8slg Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (glycyl adenylate bound)
• Resolution: 1.95 Å
• Binding residue (original residue number in PDB): V54 R57 V60
• Binding residue (residue number reindexed from 1): V53 R56 V59
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 6.1.1.14: glycine--tRNA ligase.

Gene Ontology

Molecular Function

• GO:0000166 nucleotide binding
• GO:0004812 aminoacyl-tRNA ligase activity
• GO:0004820 glycine-tRNA ligase activity
• GO:0005524 ATP binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006412 translation
• GO:0006418 tRNA aminoacylation for protein translation
• GO:0006426 glycyl-tRNA aminoacylation

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:8slg, PDBe:8slg, PDBj:8slg
• PDBsum: 8slg
• UniProt: G7CIG9