Structure of PDB 8q4d Chain B Binding Site BS03

Receptor Information
>8q4d Chain B (length=352) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRK
QRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKP
FRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYS
RMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGV
VKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFE
SIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSY
LSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEIS
HV
Ligand information
>8q4d Chain d (length=118) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccttctggggaattttaaaccggcgattttggggaaaaaataatcggcct
tgacagctgcacagtaagagaattatgcagtgctgccataaccatgagtg
ataacactgcggccaact
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q4d Molecular basis for transposase activation by a dedicated AAA+ ATPase.
Resolution3.62 Å
Binding residue
(original residue number in PDB)		S21 R25 R31 K32 R35 R52 S54 K55 G89 G90 T92 I93 Q161 D162 Q163 K190 D194 N204
Binding residue
(residue number reindexed from 1)		S21 R25 R31 K32 R35 R52 S54 K55 G89 G90 T92 I93 Q161 D162 Q163 K190 D194 N204
Gene Ontology
Biological Process
GO:0006310 DNA recombination
GO:0032196 transposition

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Molecular Function
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Biological Process
External links
PDB RCSB:8q4d, PDBe:8q4d, PDBj:8q4d
PDBsum8q4d
PubMed38926614
UniProtQ45618|TRA6_GEOSE Putative transposase for insertion sequence element IS5376

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