Structure of PDB 8jq4 Chain B Binding Site BS03

Receptor Information
>8jq4 Chain B (length=409) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRDLDT
LEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRDFWI
RHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLKALD
EIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLWTID
AGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALIRIT
RSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAPIDQ
LKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNNIHQ
YEKDVQFKR
Ligand information
Ligand IDRM4
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6-/m0/s1
InChIKeySHZGCJCMOBCMKK-YJRYQGEOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)O)O)O)O
CACTVS 3.341C[C@@H]1O[C@H](O)[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namebeta-L-rhamnopyranose;
beta-L-rhamnose;
6-deoxy-beta-L-mannopyranose;
L-rhamnose;
rhamnose
ChEMBL
DrugBank
ZINCZINC000003861281
PDB chain8jq4 Chain B Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8jq4 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Resolution1.61 Å
Binding residue
(original residue number in PDB)		H97 W187 E228 H264 D328
Binding residue
(residue number reindexed from 1)		H86 W176 E217 H253 D317
Annotation score5
Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jq4, PDBe:8jq4, PDBj:8jq4
PDBsum8jq4
PubMed38430263
UniProtA0A171J5T1

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