Structure of PDB 8ity Chain B Binding Site BS03

Receptor Information
>8ity Chain B (length=1105) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
APIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTS
DADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDI
EYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGG
YFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMA
VKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGP
SLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTI
LTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQ
LLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVN
AISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSG
PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASN
LGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGY
INEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQG
YRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV
CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQK
PMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFG
RCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSP
GEKVENKQVLVNKSMPTVTQQPQYKDVPITYKGATDSYIEKVMISSNAED
AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDI
IMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLV
RHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGP
RAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEV
DVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK
LSKYN
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8ity Chain B Residue 1201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ity Structure of the SNAPc-bound RNA polymerase III preinitiation complex.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		C1080 C1083 C1092 C1095
Binding residue
(residue number reindexed from 1)		C1053 C1056 C1065 C1068
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0001056 RNA polymerase III activity
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
GO:0071667 DNA/RNA hybrid binding
Biological Process
GO:0006351 DNA-templated transcription
GO:0032728 positive regulation of interferon-beta production
GO:0042796 snRNA transcription by RNA polymerase III
GO:0045087 innate immune response
GO:0045089 positive regulation of innate immune response
GO:0051607 defense response to virus
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005666 RNA polymerase III complex
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ity, PDBe:8ity, PDBj:8ity
PDBsum8ity
PubMed37165065
UniProtQ9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 (Gene Name=POLR3B)

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