Structure of PDB 8gja Chain B Binding Site BS03

Receptor Information
>8gja Chain B (length=335) Species: 6376 (Alvinella pompejana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DLNPRIIYSIKKAHLHDYGTILSLSAADIQRMTRLSASDVHQLQKTVAER
IRRTPHTTAFHLHRRSGPAELNRDHLTTGCQQLDSFLRGGILTRTLTEIA
GESASGKTQLCMQLCLTVQLPEQMGGLGGGAVYICTEDVFPNKRLVQMIS
QLKQRAHDVKVKDICFTDNIFIEHAAELDDLHYCVSKKVPVLLAQRHVKL
IIIDSIAALFRCEHDSQSLQERARLMQLIASKLLQLANQFNVPAICVNQV
SDVVEQHRKVIPTLGISWANHVTVRLMLMRTNYKLPVQQKNIEGDVIGSL
DVQIRTMEVLFAPHLPNSLCRFIVDQDGVKGLPAK
Ligand information
Ligand IDBEF
InChIInChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3
InChIKeyOGIAHMCCNXDTIE-UHFFFAOYSA-K
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0[Be-](F)(F)F
ACDLabs 10.04
CACTVS 3.341		F[Be-](F)F
FormulaBe F3
NameBERYLLIUM TRIFLUORIDE ION
ChEMBL
DrugBank
ZINC
PDB chain8gja Chain B Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8gja RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		T112 D208
Binding residue
(residue number reindexed from 1)		T108 D204
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 08:48:46 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8gja', asym_id = 'B', bs = 'BS03', title = 'RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8gja', asym_id='B', bs='BS03', title='RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003677,0005524,0006281,0140664', uniprot = '', pdbid = '8gja', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0005524,0006281,0140664', uniprot='', pdbid='8gja', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>