Structure of PDB 8gcb Chain B Binding Site BS03

Receptor Information
>8gcb Chain B (length=93) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEG
VPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKY
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain8gcb Chain B Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8gcb Zinc finger 1 of the RING E3 ligase, RNF125, interacts with the E2 to enhance ubiquitylation.
Resolution2.39 Å
Binding residue
(original residue number in PDB)		C100 C103 H115 C119
Binding residue
(residue number reindexed from 1)		C67 C70 H82 C86
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
External links
PDB RCSB:8gcb, PDBe:8gcb, PDBj:8gcb
PDBsum8gcb
PubMed37541247
UniProtQ96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 (Gene Name=RNF125)

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