Structure of PDB 8ai5 Chain B Binding Site BS03

Receptor Information
>8ai5 Chain B (length=323) Species: 1423 (Bacillus subtilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLYFQGHMYNKTVSINLDSRCNASCDHCCFSSSPTSTTRMEKEYIRELVT
EFAKNKTIQVISFTGGEVFLDYKFLKELMEIIKPYEKQITLISNGFWGLS
KKKVQEYFHDMNSLNVIALTISYDEYHAPFVKSSSIKNILEHSRKYPDID
ISLNMAVTKDKMSNHILEELGDSILGVKITKFPMISVGAAKTRIKQENIH
KFYSLEDEDSLHCPGYDIVYHHDGEIYPCASPAIFETKITLREEYNQSFE
RTVEKLNSNLLLFILRKEGFKWFLNILKENNKIEEFDIPYEFSSICGVCG
SLFNSAEKINYFYPYMEKYYNEN
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain8ai5 Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ai5 Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		C206 C222 S224 F263 C289 C292
Binding residue
(residue number reindexed from 1)		C213 C229 S231 F270 C296 C299
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:8ai5, PDBe:8ai5, PDBj:8ai5
PDBsum8ai5
PubMed38158457
UniProtQ45595|YYDG_BACSU Putative peptide biosynthesis protein YydG (Gene Name=yydG)

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