Structure of PDB 8afj Chain B Binding Site BS03

Receptor Information
>8afj Chain B (length=197) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IPEIDAFLGCPTPDAWIEAALADQETLLIDHKNCEFKAASTALSLIAKYN
THLDLINMMSRLAREELVHHEQVLRLMKRRGVPLRPVSAGRYASGLRRLV
RAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEELGRFYHGLLKSEAR
HYQGYLKLAHNYGDEADIARRVELVRAAEMELIQSPDQELRFHSGIP
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8afj Chain B Residue 306 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8afj tRNA modifying enzyme MiaE soaked in Na-dithionite in a glovebox and flash-cooled using a miniature-airlock
Resolution1.6 Å
Binding residue
(original residue number in PDB)		D8 A9 L11
Binding residue
(residue number reindexed from 1)		D5 A6 L8
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006400 tRNA modification

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Molecular Function
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Biological Process
External links
PDB RCSB:8afj, PDBe:8afj, PDBj:8afj
PDBsum8afj
PubMed
UniProtA0A179QS89

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