Structure of PDB 8a3y Chain B Binding Site BS03

Receptor Information
>8a3y Chain B (length=1122) Species: 9823 (Sus scrofa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI
DLPPRYLLKFEQIYLSKPTHWEDGAPSPMMPNEARLRNLTYSAPLYVDIT
KTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSS
RPTSTIWVSMLARIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHI
IYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKY
AKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY
GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTR
IISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSP
IGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR
KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR
HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVA
YCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT
NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGY
NQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQ
GMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLTKRDCSTFLRTSETG
IVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE
DMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPF
NDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLK
HMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF
LRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP
YACKLLFQELMSMSIAPRMMSV
Ligand information
>8a3y Chain T (length=138) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atcagaatcccggtgccgaggccgctcaattggtcgtagacagctctagc
accgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgcccagct
ccctgctggctccgagtgggttctgccgctctcaatgg
Receptor-Ligand Complex Structure
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PDB8a3y Structure of a backtracked hexasomal intermediate of nucleosome transcription.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		R1078 R1085
Binding residue
(residue number reindexed from 1)		R1026 R1033
Gene Ontology
Molecular Function
GO:0001055 RNA polymerase II activity
GO:0003682 chromatin binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0003968 RNA-dependent RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0001172 RNA-templated transcription
GO:0006366 transcription by RNA polymerase II
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0000781 chromosome, telomeric region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005665 RNA polymerase II, core complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8a3y, PDBe:8a3y, PDBj:8a3y
PDBsum8a3y
PubMed35858621
UniProtI3LGP4

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