Structure of PDB 6ura Chain B Binding Site BS03

Receptor Information

>6ura Chain B (length=440) Species: 1806508 (Candidatus Promineifilum breve) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AYKAGVRAYAVDYYVPDYIPQDTDLLCAFRIQPRGVDMIEAAAAVAAESS
TGTWTEVWSNQLTDIDFYKAKVYAITGDIAYIAYPLDLFEENSVVNIMSS
IVGNVFGFKAVGALRLEDMRIPLALVKTFPGPRVGIYDERVWSNKWDRPL
IGGTVKPKLGLSPKAYSTIIYECLSGGLDTSKDDENMNSQPFSRWRDRFM
YAQEAVDRAAAETNEFKGHWHNVTAGSTEESLRRLEYAYELGSRMVMFDF
LTAGFAASADIFKRAGELDMIVHCHRAMHAVFTRQANHGIAMRVVAKWLR
LTGGDHLHTGTVVGKLEGSWNDTLGIIDILRERYVKANLEHGLYFDQDFG
GLKASWPVASGGIHVHHVPDLLKIYGNDAFFLFGGGTHGHPDGSRAGAIA
NRAAVEAVSAGQTLQQAARSCPELRKSLELWADVKFEVVQ

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6ura Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6ura Novel bacterial clade reveals origin of form I Rubisco.
Resolution	2.17 Å
Binding residue (original residue number in PDB)	K205 D207 E208
Binding residue (residue number reindexed from 1)	K182 D184 E185
Annotation score	1

Enzymatic activity

Enzyme Commision number

4.1.1.39: ribulose-bisphosphate carboxylase.

Gene Ontology

	Molecular Function
GO:0000287	magnesium ion binding
GO:0016829	lyase activity
GO:0016984	ribulose-bisphosphate carboxylase activity
GO:0046872	metal ion binding

	Biological Process
GO:0015977	carbon fixation

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:6ura, PDBe:6ura, PDBj:6ura
PDBsum	6ura
PubMed	32868887
UniProt	A0A160T9D2

[Back to BioLiP]