Structure of PDB 6knk Chain B Binding Site BS03

Receptor Information
>6knk Chain B (length=383) Species: 158878 (Staphylococcus aureus subsp. aureus Mu50) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMYYAMA
ANSERTILDTISQYVEGFEVASQGEIAKGLAFKPANHIIFGGPGKTDEEL
RYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLAGRPTQFGI
SEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKS
WSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEMEDV
TLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQH
NHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAIST
GDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLT
Ligand information
Ligand IDX3J
InChIInChI=1S/C8H14N2O6/c9-1-2-10-5(11)3-8(16,7(14)15)4-6(12)13/h16H,1-4,9H2,(H,10,11)(H,12,13)(H,14,15)/t8-/m0/s1
InChIKeyKQWWDTIPDRWKGZ-QMMMGPOBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1C(CNC(=O)C[C@](CC(=O)O)(C(=O)O)O)N
ACDLabs 10.04O=C(O)CC(O)(C(=O)O)CC(=O)NCCN
CACTVS 3.352NCCNC(=O)C[C](O)(CC(O)=O)C(O)=O
CACTVS 3.352NCCNC(=O)C[C@](O)(CC(O)=O)C(O)=O
OpenEye OEToolkits 1.6.1C(CNC(=O)CC(CC(=O)O)(C(=O)O)O)N
FormulaC8 H14 N2 O6
Name(2S)-2-{2-[(2-AMINOETHYL)AMINO]-2-OXOETHYL}-2-HYDROXYBUTANEDIOIC ACID;
5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE
ChEMBL
DrugBank
ZINCZINC000064744242
PDB chain6knk Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6knk Structural Insights into Substrate Recognition and Activity Regulation of the Key Decarboxylase SbnH in Staphyloferrin B Biosynthesis.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
R269 R304 S308 W309 Y373 I377
Binding residue
(residue number reindexed from 1)
R258 R293 S297 W298 Y362 I366
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008836 diaminopimelate decarboxylase activity
GO:0016830 carbon-carbon lyase activity
Biological Process
GO:0006596 polyamine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:6knk, PDBe:6knk, PDBj:6knk
PDBsum6knk
PubMed31634470
UniProtA0A0H3JPF2

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