Structure of PDB 6f7l Chain B Binding Site BS03

Receptor Information
>6f7l Chain B (length=428) Species: 1928 (Streptomyces rochei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VEAKSRIAVVGGGGSGSVAAWLLARRHDVTLFEADEYLGGHAYSHPVETD
QGTLHVDMGVEHFNEKLSPNLFRLLTDFGIGTYVAPSSVHVDFPGEQQSW
NNLDFLGELREELHEEFDRFHQEMNQLPTQMSIGEYLDKHGYSKSFKYKA
MNPILSIYSGCHAPSLDYNLMYVALSFSMNLLSFFSAGYWRKAQGGIHSY
LARIESDLGERVRLNTPVEAVVPTQSGVTVLAGGQEHHFDQVVFATHADV
TLRLLRTSDQQYRDLLGDFAYVPVESVLHQDESWLSPAGGGAYCQFRMPE
GFELARAEEQMGSLTQNCNVLHPYRKVSSPILITFDPQEDVDPERVIVRR
EWKLPQLRPVDVRRKKRLHEIQGLNGLWFCGTDTSVTGHEGAIVSGMVIA
DRLGVPHPFPDDAPAAAQFRGIKEFMGV
Ligand information
Ligand IDCWH
InChIInChI=1S/C27H49NO8/c1-16(7-10-22(31)11-8-17(2)13-14-28-26(33)20(5)29)9-12-23(35-21(6)30)15-24-18(3)25(32)19(4)27(34)36-24/h16-20,22-24,27,29,31,34H,7-15H2,1-6H3,(H,28,33)/t16-,17+,18-,19+,20+,22+,23+,24-,27+/m1/s1
InChIKeyOEJUFLVQZDMQAY-BVGDNXMFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C[C@@H]1[C@H](O[C@@H]([C@H](C1=O)C)O)C[C@H](CC[C@H](C)CC[C@@H](CC[C@H](C)CCNC(=O)[C@H](C)O)O)OC(=O)C
OpenEye OEToolkits 2.0.6CC1C(OC(C(C1=O)C)O)CC(CCC(C)CCC(CCC(C)CCNC(=O)C(C)O)O)OC(=O)C
CACTVS 3.385C[C@H](CCNC(=O)[C@H](C)O)CC[C@@H](O)CC[C@@H](C)CC[C@@H](C[C@H]1O[C@H](O)[C@@H](C)C(=O)[C@@H]1C)OC(C)=O
CACTVS 3.385C[CH](CCNC(=O)[CH](C)O)CC[CH](O)CC[CH](C)CC[CH](C[CH]1O[CH](O)[CH](C)C(=O)[CH]1C)OC(C)=O
FormulaC27 H49 N O8
Name[(2~{S},5~{R},8~{S},11~{S})-1-[(2~{R},3~{R},5~{R},6~{S})-3,5-dimethyl-6-oxidanyl-4-oxidanylidene-oxan-2-yl]-5,11-dimeth yl-8-oxidanyl-13-[[(2~{S})-2-oxidanylpropanoyl]amino]tridecan-2-yl] ethanoate;
LC-KA05
ChEMBL
DrugBank
ZINC
PDB chain6f7l Chain B Residue 506 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6f7l Insights into a dual function amide oxidase/macrocyclase from lankacidin biosynthesis.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
E64 H65 L70 I167 Y168 Y182 Q326 V396 T397 Q428
Binding residue
(residue number reindexed from 1)
E61 H62 L67 I157 Y158 Y172 Q316 V386 T387 Q418
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6f7l, PDBe:6f7l, PDBj:6f7l
PDBsum6f7l
PubMed30266997
UniProtQ83X90

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