Structure of PDB 5ofr Chain B Binding Site BS03

Receptor Information
>5ofr Chain B (length=576) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KQKNSLFNYIYSLMDVRGKFLFFSMLFITSLSSIIISISPLILAKITDLL
SGSLSNFSYEYLVLLACLYMFCVISNKASVFLFMILQSSLRINMQKKMSL
KYLRELYNENITNLSKNNAGYTTQSLNQASNDIYILVRNVSQNILSPVIQ
LISTIVVVLSTKDWFSAGVFFLYILVFVIFNTRLTGSLASLRKHSMDITL
NSYSLLSDTVDNMIAAKKNNALRLISERYEDALTQENNAQKKYWLLSSKV
LLLNSLLAVILFGSVFIYNILGVLNGVVSIGHFIMITSYIILLSTPVENI
GALLSEIRQSMSSLAGFIQRHAENKATSPSIPFLNMERKLNLSIRELSFS
YSDDKKILNSVSLDLFTGKMYSLTGPSGSGKSTLVKIISGYYKNYFGDIY
LNDISLRNISDEDLNDAIYYLTQDDYIFMDTLRFNLRLANYDASENEIFK
VLKLANLSVVNNEPVSLDTHLINRGNNYSGGQKQRISLARLFLRKPAIII
IDEATSALDYINESEILSSIRTHFPDALIINISHRINLLECSDCVYVLNE
GNIVASGHFRDLMVSNEYISGLASVT
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5ofr Chain B Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5ofr Structural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		S385 Q426
Binding residue
(residue number reindexed from 1)		S382 Q423
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0034040 ATPase-coupled lipid transmembrane transporter activity
GO:0140359 ABC-type transporter activity
Biological Process
GO:0006869 lipid transport
GO:0015031 protein transport
GO:0030153 bacteriocin immunity
GO:0043213 bacteriocin transport
GO:0055085 transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5ofr, PDBe:5ofr, PDBj:5ofr
PDBsum5ofr
PubMed28864543
UniProtQ9X2W0|MCJD_ECOLX Microcin-J25 export ATP-binding/permease protein McjD (Gene Name=mcjD)

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