Structure of PDB 5b0s Chain B Binding Site BS03

Receptor Information
>5b0s Chain B (length=355) Species: 272626 (Listeria innocua Clip11262) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIYRYEENPLITPLDVKPIHEGFEVIGAFNGGVAEYNGEVLLLLRVAEK
PVSEDPEIVLAPVYNAKNKELELQSFRLDDENYDFEDPRMIRSKAKLEGF
SYLTSLSYIRIARSKDGHHFTLDEKPFLYPFNEYQTFGIEDARVTQIGDT
YHVNFSAVSEFGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGK
YYALHRPSLKSIGNLDIWIASSPDLRSFGDHRHLLGIRPGEYDSGRVGGG
CVPIKTEEGWLILYHGATEENRYVMGAALLDLNDPTIVLKRTKTPILEPV
ADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADTSMAGCDMKISEILHQL
EVEAK
Ligand information
Ligand IDBMA
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-RWOPYEJCSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-mannopyranose;
beta-D-mannose;
D-mannose;
mannose
ChEMBL
DrugBank
ZINCZINC000003830679
PDB chain5b0s Chain D Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5b0s Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Resolution2.1 Å
Binding residue
(original residue number in PDB)		N31 R89 D141 K188 D333
Binding residue
(residue number reindexed from 1)		N31 R89 D141 K188 D333
Annotation score5
Enzymatic activity
Enzyme Commision number 2.4.1.339: beta-1,2-mannobiose phosphorylase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:5b0s, PDBe:5b0s, PDBj:5b0s
PDBsum5b0s
PubMed26632508
UniProtQ92DF6|BMBP_LISIN Beta-1,2-mannobiose phosphorylase (Gene Name=lin0857)

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