Structure of PDB 4v1u Chain B Binding Site BS03
Receptor Information
>4v1u Chain B (length=743) Species:
118322
(Lyngbya aestuarii) [
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LLQIQPHFHVEVIEPKQVYLLGEQANHALTGQLYCQILPLLNGQYTLEQI
VEKLDGEVPPEYIDYVLERLAEKGYLTEAAPELSSEVAAFWSELGIAPPV
AAEALRQPVTLTPVGNISEVTVAALTTALRDIGISVQTTALNVVLTDDYL
QPELAKINKQALESQQTWLLVKPVGSVLWLGPVFVPGKTGCWDCLAHRLR
GNREVEASVLRQKQAQGCLPTARATLPSTLQTGLQFAATEIAKWIVKYHV
NATAPGTVFFPTLDGKIITLNHSILDLKSHILIKRSQCPTCGDPKILQHR
GFEPLKLESRPKQGHRGTTPEQTVQKYQHLISPVTGVVTELVRITDPANP
LVHTYRAGHGSATSLRGLRNTLKHKSSGKGKTDSQSKASGLCEAVERYSG
IFQGDEPRKRATLAELGDLAIHPEQCLCFSDGQYANRETLNEQATVAHDW
IPQRFDASQAIEWTPVWSLTEQTHKYLPTALCYYHYPLPPEHRFARGDSN
GNAAGNTLEEAILQGFMELVERDGVALWWYNRLRRPAVDLGSFNEPYFVQ
LQQFYRENDRDLWVLDLTADLGIPAFAGVSNRKTSERLILGFGAHLDPTI
AILRAVTEVNQIGLELDKVPDENLKSDATDWLITEKLADHPYLLPDTTQP
LKTAQDYPKRWSDDIYTDVMTCVNIAQQAGLETLVIDQTRPDIGLNVVKV
TVPGMRHFWSRFGEGRLYDVPVKLGWLDEPLTEAQMNPTPMPF
Ligand information
Ligand ID
AMP
InChI
InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
UDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
Software
SMILES
CACTVS 3.370
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01
O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
Formula
C10 H14 N5 O7 P
Name
ADENOSINE MONOPHOSPHATE
ChEMBL
CHEMBL752
DrugBank
DB00131
ZINC
ZINC000003860156
PDB chain
4v1u Chain B Residue 777 [
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Receptor-Ligand Complex Structure
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PDB
4v1u
Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing.
Resolution
2.86 Å
Binding residue
(original residue number in PDB)
R344 K409 S419 C422 E423 E426 A533 A534 N536 R636
Binding residue
(residue number reindexed from 1)
R316 K379 S389 C392 E393 E396 A503 A504 N506 R604
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:4v1u
,
PDBe:4v1u
,
PDBj:4v1u
PDBsum
4v1u
PubMed
26098679
UniProt
A0YXD2
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