Structure of PDB 4nl8 Chain B Binding Site BS03

Receptor Information
>4nl8 Chain B (length=566) Species: 272620 (Klebsiella pneumoniae subsp. pneumoniae MGH 78578) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VAHVALPVPLPRTFDYLLPEKAGCRVRVPFGKQERIGIVAAVLKPVAELD
DEPVFSTTVWRLLMWAAEYYHHPIGDVLFHALPVMLRQGKPASALRLNTE
QATAVGAIHSAADRFSAWLLAGITGSGKTEVYLSVLENVLAQGRQALVMV
PEIGLTPQTIARFRQRFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIG
TRSSLFTPFKDLGVIVIDEEHDSSYKQQEGWRYHARDLAVWRAHSEQIPI
ILGSATPALETLHNVRQGKYRQLTLQQHVLDLKGQPLQAGLSPALISRMR
QHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDSYYTLHQAQHHLR
CHHCDSQRPIPRQCPSCGSTHLVPVGIGTEQLEQALAPLFPGGARILIGT
QMLAKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGEVI
LQTHHPEHPLLQTLLYKGYDAFAEQALAERQTMQLPPWTSHVLIRANNQQ
APLFLQQLRNLLQASPLADEKLWVLGPVPALAWQILLQHPSRVRLQHIVS
GTLALIWVLDVDPIEG
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain4nl8 Chain B Residue 802 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4nl8 Structural mechanisms of PriA-mediated DNA replication restart.
Resolution4.08 Å
Binding residue
(original residue number in PDB)		C444 C447 C462 C465
Binding residue
(residue number reindexed from 1)		C333 C336 C351 C354
Annotation score4
Enzymatic activity
Enzyme Commision number 3.6.4.-
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0043138 3'-5' DNA helicase activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006268 DNA unwinding involved in DNA replication
GO:0006269 DNA replication, synthesis of primer
GO:0006270 DNA replication initiation
GO:0006302 double-strand break repair
GO:0006310 DNA recombination
GO:0032508 DNA duplex unwinding
Cellular Component
GO:1990077 primosome complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4nl8, PDBe:4nl8, PDBj:4nl8
PDBsum4nl8
PubMed24379377
UniProtA6TGC5

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