Structure of PDB 4k8k Chain B Binding Site BS03

Receptor Information
>4k8k Chain B (length=330) Species: 347834 (Rhizobium etli CFN 42) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTRFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRM
GPALEASGGSAGNTAAGVANLGGKAAYFGNVAADQLGDIFTHDIRAQGVH
YQTKPKGAFPPTARSMIFVTEDGERSMNTYLGACVELGPEDVEADVVADA
KVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSFCVDRYRGEF
LDLMRSGKVDIVFANRQEALSLYQTDDFEEALNRIAADCKIAAVTMSENG
AVILKGRERYYVNAIRIREVVDTTGAGDLFASGFLYGYTQGRSLEDCGKL
GCLAAGIVIQQIGPRPMTSLSEAAKQAGLI
Ligand information
Ligand ID1PK
InChIInChI=1S/C11H9N3/c12-11-13-8-5-1-3-7-4-2-6-9(14-11)10(7)8/h1-6H,(H3,12,13,14)
InChIKeyUNDUSVBXIVZGOQ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.370NC1=Nc2cccc3cccc(N1)c23
ACDLabs 12.01N=3c2cccc1cccc(c12)NC=3N
OpenEye OEToolkits 1.7.6c1cc2cccc3c2c(c1)NC(=N3)N
FormulaC11 H9 N3
Name1H-perimidin-2-amine
ChEMBLCHEMBL311074
DrugBank
ZINCZINC000016978457
PDB chain4k8k Chain B Residue 405 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4k8k Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with 1-(4-methoxyphenyl)-1-cyclopropane and 2-aminoperimidine
Resolution1.5 Å
Binding residue
(original residue number in PDB)		A81 D82 D86
Binding residue
(residue number reindexed from 1)		A83 D84 D88
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R123 G273 A274 G275 D276
Catalytic site (residue number reindexed from 1) R125 G275 A276 G277 D278
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016301 kinase activity
GO:0016772 transferase activity, transferring phosphorus-containing groups
Biological Process
GO:0016310 phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:4k8k, PDBe:4k8k, PDBj:4k8k
PDBsum4k8k
PubMed
UniProtQ2KDX6

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