Structure of PDB 3wcw Chain B Binding Site BS03

Receptor Information
>3wcw Chain B (length=144) Species: 104711 (Lamellibrachia satsuma) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SECGPLQRLKVKRQWAEAYGSGNGREEFGHFIWANVFKVAPSARDMFKRV
RGDNIYTPAFRAHATRVLGGLDMCVALLDDESVLNTQLAHLASQHSSRGV
SAEQYNVVEHAVMMGVEHEIGQNVFDKDAWQACLDVITSGIQGN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain3wcw Chain B Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3wcw The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Resolution2.5 Å
Binding residue
(original residue number in PDB)
N106 E109 D135
Binding residue
(residue number reindexed from 1)
N106 E109 D135
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005344 oxygen carrier activity
GO:0005506 iron ion binding
GO:0019825 oxygen binding
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0001666 response to hypoxia
GO:0015671 oxygen transport
Cellular Component
GO:0005576 extracellular region
GO:0005833 hemoglobin complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:3wcw, PDBe:3wcw, PDBj:3wcw
PDBsum3wcw
PubMed25004960
UniProtS0BBR6

[Back to BioLiP]