Structure of PDB 3tmc Chain B Binding Site BS03

Receptor Information
>3tmc Chain B (length=306) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKDKK
LRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNNAE
EVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISHHG
VTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSM
SPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGLRE
KDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQHL
NDILKG
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain3tmc Chain B Residue 311 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3tmc The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
Resolution1.55 Å
Binding residue
(original residue number in PDB)		H150 D184 H187 W209 H212 E238 N265 R269
Binding residue
(residue number reindexed from 1)		H149 D183 H186 W208 H211 E237 N264 R268
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3tmc, PDBe:3tmc, PDBj:3tmc
PDBsum3tmc
PubMed21990613
UniProtQ6MM30

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