Structure of PDB 3tmb Chain B Binding Site BS03

Receptor Information
>3tmb Chain B (length=318) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHSSGLVPRGSHMDYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDS
FEGERLKRLKDKKLRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTR
ADIIQGSQQNNAEEVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVM
NIENTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHH
HSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHE
ETINGTGPKGLREKDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMID
HVGKHPLQHIQHLNDILK
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain3tmb Chain B Residue 311 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3tmb The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		D184 H187 W209 H212 E238 N265 R269
Binding residue
(residue number reindexed from 1)		D196 H199 W221 H224 E250 N277 R281
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3tmb, PDBe:3tmb, PDBj:3tmb
PDBsum3tmb
PubMed21990613
UniProtQ6MM30

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