Structure of PDB 3tm8 Chain B Binding Site BS03

Receptor Information
>3tm8 Chain B (length=307) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKDKK
LRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNNAE
EVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISHHG
VTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSM
SPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGLRE
KDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQHL
NDILKGL
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain3tm8 Chain B Residue 903 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3tm8 The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
Resolution1.28 Å
Binding residue
(original residue number in PDB)		D184 H212 H237 E238
Binding residue
(residue number reindexed from 1)		D183 H211 H236 E237
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3tm8, PDBe:3tm8, PDBj:3tm8
PDBsum3tm8
PubMed21990613
UniProtQ6MM30

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