Structure of PDB 3m6z Chain B Binding Site BS03

Receptor Information
>3m6z Chain B (length=366) Species: 190192 (Methanopyrus kandleri AV19) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELL
ELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARY
AIVYRRGWRAIAKALDIEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLM
PVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIAR
RLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLE
ELYEHLEELSERYLPLTRRWIVEHKRDIMRRYLEQRIVECALKLQDRYGI
REDVALCLARAFDGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLI
DEHGLSPDAADELIEH
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain3m6z Chain B Residue 383 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3m6z Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding.
Resolution1.4 Å
Binding residue
(original residue number in PDB)		Y30 R37 E129 R131 A132 Y289 R293
Binding residue
(residue number reindexed from 1)		Y27 R34 E124 R126 A127 Y282 R286
Annotation score3
Enzymatic activity
Enzyme Commision number ?
External links