Structure of PDB 3e7b Chain B Binding Site BS03
Receptor Information
>3e7b Chain B (length=294) Species:
9606
(Homo sapiens) [
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SLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLEL
EAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC
LLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDC
FNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLL
WSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGY
EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA
Ligand information
Ligand ID
E7B
InChI
InChI=1S/C41H68O14/c1-21(2)36(53-34(47)20-31(45)35(40(50)51)27(8)39(48)49)38(52-10)32(46)19-30(44)26(7)29(43)13-11-24(5)37-25(6)16-18-41(55-37)17-15-23(4)33(54-41)14-12-22(3)28(9)42/h21-26,29,31-33,36-38,43,45-46H,11-20H2,1-10H3,(H,48,49)(H,50,51)/b35-27-/t22-,23+,24+,25-,26-,29-,31+,32+,33-,36+,37-,38-,41+/m0/s1
InChIKey
FLYBGKSOQRCWMB-SPVJCFRKSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
CC1CCC2(CCC(C(O2)C(C)CCC(C(C)C(=O)CC(C(C(C(C)C)OC(=O)CC(C(=C(C)C(=O)O)C(=O)O)O)OC)O)O)C)OC1CCC(C)C(=O)C
CACTVS 3.341
CO[C@@H]([C@H](O)CC(=O)[C@@H](C)[C@@H](O)CC[C@@H](C)[C@@H]1O[C@]2(CC[C@@H](C)[C@H](CC[C@H](C)C(C)=O)O2)CC[C@@H]1C)[C@H](OC(=O)C[C@@H](O)\C(C(O)=O)=C(/C)C(O)=O)C(C)C
OpenEye OEToolkits 1.5.0
C[C@@H]1CC[C@@]2(CC[C@@H]([C@@H](O2)[C@H](C)CC[C@@H]([C@H](C)C(=O)C[C@H]([C@@H]([C@@H](C(C)C)OC(=O)C[C@H](/C(=C(\C)/C(=O)O)/C(=O)O)O)OC)O)O)C)O[C@H]1CC[C@H](C)C(=O)C
CACTVS 3.341
CO[CH]([CH](O)CC(=O)[CH](C)[CH](O)CC[CH](C)[CH]1O[C]2(CC[CH](C)[CH](CC[CH](C)C(C)=O)O2)CC[CH]1C)[CH](OC(=O)C[CH](O)C(C(O)=O)=C(C)C(O)=O)C(C)C
ACDLabs 10.04
O=C(O)\C(=C(/C(=O)O)C(O)CC(=O)OC(C(C)C)C(OC)C(O)CC(=O)C(C)C(O)CCC(C2OC1(OC(C(CC1)C)CCC(C(=O)C)C)CCC2C)C)C
Formula
C41 H68 O14
Name
ChEMBL
CHEMBL406220
DrugBank
ZINC
ZINC000095613474
PDB chain
3e7b Chain B Residue 500 [
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Receptor-Ligand Complex Structure
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PDB
3e7b
Crystal structures of protein phosphatase-1 bound to nodularin-R and tautomycin: a novel scaffold for structure-based drug design of serine/threonine phosphatase inhibitors
Resolution
1.7 Å
Binding residue
(original residue number in PDB)
R96 C127 I130 V195 W206 D220 R221 V223 H248 Q249 V250 Y272 F276
Binding residue
(residue number reindexed from 1)
R91 C122 I125 V190 W201 D215 R216 V218 H243 Q244 V245 Y267 F271
Annotation score
1
Binding affinity
MOAD
: ic50=0.16nM
Enzymatic activity
Catalytic site (original residue number in PDB)
D64 H66 D92 D95 R96 N124 H125 H173 R221 H248
Catalytic site (residue number reindexed from 1)
D59 H61 D87 D90 R91 N119 H120 H168 R216 H243
Enzyme Commision number
3.1.3.16
: protein-serine/threonine phosphatase.
Gene Ontology
Molecular Function
GO:0016787
hydrolase activity
View graph for
Molecular Function
External links
PDB
RCSB:3e7b
,
PDBe:3e7b
,
PDBj:3e7b
PDBsum
3e7b
PubMed
18992256
UniProt
P62136
|PP1A_HUMAN Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (Gene Name=PPP1CA)
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