Structure of PDB 2odj Chain B Binding Site BS03

Receptor Information
>2odj Chain B (length=388) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GMFVSDQAEAKGFIEDSSLDLLLRNYYFNRDGKDRVDWTQGFLTTYESGF
TQGTVGFGVDAFGYLGLKLDGTDYSRAGGAVKVRISKTMLKWGEMQPTAP
VFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTEELYATYAGETAKSA
DFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFN
IYRTNDGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGF
GRGGDSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYIN
GKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRI
RQAWHRANADQGEGDQNEFRLIVDYPLSILHHHHHHHH
Ligand information
Ligand IDC8E
InChIInChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3
InChIKeyFEOZZFHAVXYAMB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O(CCCCCCCC)CCOCCOCCOCCO
CACTVS 3.341
OpenEye OEToolkits 1.5.0		CCCCCCCCOCCOCCOCCOCCO
FormulaC16 H34 O5
Name(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
ChEMBL
DrugBankDB04233
ZINCZINC000014881140
PDB chain2odj Chain B Residue 429 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2odj Structural insight into OprD substrate specificity.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		W42 V413
Binding residue
(residue number reindexed from 1)		W38 V373
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.-
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
GO:0015288 porin activity
Biological Process
GO:0006508 proteolysis
GO:0006811 monoatomic ion transport
GO:0015802 basic amino acid transport
GO:0055085 transmembrane transport
Cellular Component
GO:0009279 cell outer membrane
GO:0016020 membrane
GO:0019867 outer membrane
GO:0046930 pore complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2odj, PDBe:2odj, PDBj:2odj
PDBsum2odj
PubMed17952093
UniProtP32722|PORD_PSEAE Porin D (Gene Name=oprD)

[Back to BioLiP]