Structure of PDB 1y9i Chain B Binding Site BS03

Receptor Information
>1y9i Chain B (length=159) Species: 1639 (Listeria monocytogenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELDICRQNVEHV
LRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALSI
VNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAA
SRLAHSYHD
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain1y9i Chain B Residue 817 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1y9i Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires".
Resolution1.8 Å
Binding residue
(original residue number in PDB)		E60 N63 S104
Binding residue
(residue number reindexed from 1)		E55 N58 S99
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008962 phosphatidylglycerophosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0006629 lipid metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:1y9i, PDBe:1y9i, PDBj:1y9i
PDBsum1y9i
PubMed16838328
UniProtQ8Y4N7

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