Structure of PDB 6p5n Chain Aq Binding Site BS03

Receptor Information
>6p5n Chain Aq (length=416) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADE
FGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEG
KEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSG
ALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKV
AETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVD
ISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGV
EDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKS
HFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKG
FGGIGGILRYRVDFQG
Ligand information
>6p5n Chain 1 (length=207) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
caucauucuaugguuacccaucauuagaggaaauuuccaauaaacucugg
uguaaggcuuagagugauggucgaggugcccuauuuagggugaggagccu
cgguggcagccccaccaaauccucuauuggauaggaacagcuguacuggg
caguuacagcagucguaugguaacacaugcggcguuccgaaauaccaugc
cuugaua
.<<<<<<<<<........<..<<<<<<<<........(......>>>>>>
>>...>...>>>>>>>>>......(.(<<<<<....>>>>>.<<<<)..)
.<<<<<.....>>>>>...>>>>......)...<<<<<.<<<<<<..(((
(...>>>>>>.<<<<<<<<......>>>>>>>>>>>>>..........))
)).....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6p5n The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		K50 A53 D54 E55 G57 N61 I62 K63 S64
Binding residue
(residue number reindexed from 1)		K45 A48 D49 E50 G52 N56 I57 K58 S59
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Apr 10 21:55:34 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6p5n', asym_id = 'Aq', bs = 'BS03', title = 'The Israeli acute paralysis virus IRES captures ...by mimicking a ribosomal state with hybrid tRNAs.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6p5n', asym_id='Aq', bs='BS03', title='The Israeli acute paralysis virus IRES captures ...by mimicking a ribosomal state with hybrid tRNAs.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003747,0006415', uniprot = '', pdbid = '6p5n', asym_id = 'Aq'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003747,0006415', uniprot='', pdbid='6p5n', asym_id='Aq')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>