Structure of PDB 8hl4 Chain AEFG Binding Site BS03

Receptor Information
>8hl4 Chain AEFG (length=724) Species: 330779 (Sulfolobus acidocaldarius DSM 639) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VEQVLSLMKDVTRVRNIGIIAHVDHGKTTTSDTLLAASGIISQALALDYL
SVEQQRGITVKAANISLYHEIDGKGYVINLIDTPGHVDFSGRVTRSLRVL
DGSIVVIDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLIKELKLSSQ
EIQKRLIDLIIEVNNLIETYGEPEFKDQWKIKPELGNVVFGSAKDKWGFS
VPMAGKRGVKFSDVVNAYTSGDKAKIEELASKVPIHEALLDAVIKFVPNP
RDSQKYRIPKIWKGDLDSEIAKAMINADPNGPIVMMINDMKVDPHAGLVA
TGRVFSGTLRAGEEVWLVNAKRQQRILQVSLYMGAIRELAEEIPVGNIAA
ALGMDAARSGETGVDIRFKDSVLGSFEKLHYISEPVVTISVEPRNPKDLT
KMIDALRKLSIEDSNLVVKINEETGEYLLSGMGFLHLEVSLQLLKENYGL
DVVTTPPIVVYRESIRNKSQVFEGKSPNKHNKLYISVEPLNNQTIDLIAN
GTIKEDMDNKEMAKILRDQAEWDYDEAKKIVAIDENINVFIDATSGVQHL
REIMDTLLQGFRLAMKEGPLAFEPVRGVKVVLHDAVVHEDPAHRGPAQLY
PAVRNAIFAGILTSKPTLLEPLQKLDIRIPMEYLGNVTAVITRKRGKVIN
VVQTGNVARVYAEIPVGESFELASELRASSAGRAFWGTEFSRWAPVPDSI
LVDLIMKIRERKGKPKQLPKVEDF
Ligand information
Ligand IDGNP
InChIInChI=1S/C10H17N6O13P3/c11-10-13-7-4(8(19)14-10)12-2-16(7)9-6(18)5(17)3(28-9)1-27-32(25,26)29-31(23,24)15-30(20,21)22/h2-3,5-6,9,17-18H,1H2,(H,25,26)(H3,11,13,14,19)(H4,15,20,21,22,23,24)/t3-,5-,6-,9-/m1/s1
InChIKeyUQABYHGXWYXDTK-UUOKFMHZSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
OpenEye OEToolkits 1.5.0c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O)O)N=C(NC2=O)N
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.341NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O
FormulaC10 H17 N6 O13 P3
NamePHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
ChEMBLCHEMBL1233085
DrugBankDB02082
ZINCZINC000037868676
PDB chain8hl4 Chain AEFG Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8hl4 Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution4.62 Å
Binding residue
(original residue number in PDB)		H28 V29 D30 G32 K33 T34 R67 G68 P95 G96 N147 K148 S203 K205
Binding residue
(residue number reindexed from 1)		H22 V23 D24 G26 K27 T28 R56 G57 P84 G85 N136 K137 S192 K194
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003746 translation elongation factor activity
GO:0003924 GTPase activity
GO:0005525 GTP binding
Biological Process
GO:0006412 translation
GO:0006414 translational elongation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8hl4, PDBe:8hl4, PDBj:8hl4
PDBsum8hl4
PubMed37604686
UniProtP23112|EF2_SULAC Elongation factor 2 (Gene Name=fusA)

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