Structure of PDB 9ex2 Chain A Binding Site BS03

Receptor Information
>9ex2 Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDA1H8D
InChIInChI=1S/33O.15V/q21*-2;12*-1;15*+4
InChIKeyDLKKHOPCDYTIQY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[O-]=[V+4]123[O-2][V+4]45[O-2]6[V+4]78[O-2]4[V+4]94(=[O-])[O-2]7[V+4]7%10(=[O-])[O-2]8[V+4]8%11(=[O-])[O-2]7[V+4]7%12(=[O-])[O-2]8[V+4]8%13(=[O-])[O-2]%11[V+4]66(=[O-])[O-2]5[V+4]5(=[O-])([O-2]68)[O-2]1[V+4]16(=[O-])[O-2]5[V+4]5([O-2]%13)[O-2]1[V+4]1(=[O-])([O-2]57)[O-2]%12[V+4]5(=[O-])([O-2]%10)[O-2]9[V+4](=[O-])([O-2]42)([O-2]36)[O-2]51
CACTVS 3.385[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O-].[O--]1[V+4][O--][V+4]1[O--][V+4]2[O--][V+4]3[O--][V+4][O--][V+4]4[O--][V+4]([O--]4)[O--][V+4]([O--]3)[O--][V+4]5[O--][V+4][O--][V+4]67[O--][V+4]([O--][V+4][O--][V+4]([O--][V+4]([O--]5)[O--]6)[O--]7)[O--]2
FormulaO33 V15
NamePolyoxidovanadate complex
ChEMBL
DrugBank
ZINC
PDB chain9ex2 Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9ex2 Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Resolution1.172 Å
Binding residue
(original residue number in PDB)
Y20 R21 K96
Binding residue
(residue number reindexed from 1)
Y20 R21 K96
Annotation score1
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:9ex2, PDBe:9ex2, PDBj:9ex2
PDBsum9ex2
PubMed38842919
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

[Back to BioLiP]