Structure of PDB 8ui6 Chain A Binding Site BS03
Receptor Information
>8ui6 Chain A (length=527) Species:
508771
(Toxoplasma gondii ME49) [
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LEGAGPGRLHGRLGIKPDGQPGYTRAPSPPTDLSMPQALARGGGFNLYLS
DHLELDRTAPDARHASCRQLHYDLSTLPKASVIIVFYNEPFSTLMRSVHS
VLNGTPPQILEELILVDDGSTLPYIREDGNQQLVEYLKLLPAKVRLIRNE
VRKGIVGARMKGIRASRAPIFAILDSHIEVSPQWLEPLLLRIKEDSRRVV
MPQIDGIDAETFKHIAGGIGCKLGFLWKLMEHSYEGHQTARLPPEERQPS
PTDFQTSPAMAGGLFAANKAFFFDVGAYDEDFQFWGTENLELSFRLWQCG
GVLECAPCSRVYHIFRKGGSGYSSPGDSITINKMRTMLWMDEYADLAWRV
IGKPRVNYRPESLEKRREWRKRKGCKSFRWFMENVFPEGDVVTLDDVPYL
GPLRNDKIGMCLDNMGWASPGHAVGLEYCHGGDTQTFMFFRKVGHVMPVN
DDEACLQPSGRLDWCRGTAQFWWDFTSSGQLMFRETKQCLSAFGRKLRMV
ECDDTDPYQIWSWTAYNPPDTFTFPSV
Ligand information
Ligand ID
UDP
InChI
InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey
XCCTYIAWTASOJW-XVFCMESISA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370
O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01
O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
Formula
C9 H14 N2 O12 P2
Name
URIDINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL130266
DrugBank
DB03435
ZINC
ZINC000004490939
PDB chain
8ui6 Chain A Residue 702 [
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Receptor-Ligand Complex Structure
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PDB
8ui6
A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues.
Resolution
2.65 Å
Binding residue
(original residue number in PDB)
V186 F187 Y188 D219 R253 I256 D276 S277 H278 W386 H414 R417 Y423
Binding residue
(residue number reindexed from 1)
V85 F86 Y87 D118 R152 I155 D175 S176 H177 W285 H313 R316 Y322
Annotation score
3
Enzymatic activity
Enzyme Commision number
2.4.1.41
: polypeptide N-acetylgalactosaminyltransferase.
External links
PDB
RCSB:8ui6
,
PDBe:8ui6
,
PDBj:8ui6
PDBsum
8ui6
PubMed
38710711
UniProt
A0A125YMZ8
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