Structure of PDB 8two Chain A Binding Site BS03

Receptor Information

>8two Chain A (length=294) Species: 317 (Pseudomonas syringae)

RALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSA
GDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTP
LVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLN
TFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPII
KDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAA
RAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSDC

Ligand information

• Ligand ID: RAM
• InChI: InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6+/m0/s1
• InChIKey: SHZGCJCMOBCMKK-HGVZOGFYSA-N
• SMILES:
  CACTVS 3.341: C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O)[C@H]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)C
  OpenEye OEToolkits 1.5.0: C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: CC1C(C(C(C(O1)O)O)O)O
  CACTVS 3.341: C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
• Formula: C6 H12 O5
• Name: alpha-L-rhamnopyranose;
  alpha-L-rhamnose;
  6-deoxy-alpha-L-mannopyranose;
  L-rhamnose;
  rhamnose
• ZINC: ZINC000003861280
• PDB chain: 8two Chain A Residue 402

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8two Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4.
• Resolution: 2.09 Å
• Binding residue (original residue number in PDB): Y131 M262 D297
• Binding residue (residue number reindexed from 1): Y105 M236 D271
• Annotation score: 4

Gene Ontology

Cellular Component

• GO:0005576 extracellular region

External links

• PDB: RCSB:8two, PDBe:8two, PDBj:8two
• PDBsum: 8two
• PubMed: 38354245
• UniProt: P13835|AVRB_PSESG Avirulence protein B (Gene Name=avrB)