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Structure of PDB 8rfg Chain A Binding Site BS03

Receptor Information
>8rfg Chain A (length=2765) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DHNDSIRASYMTIEELHDAGAALSRDGADSLPGFMEFDFFERHRENEKEI
LRVYRTTAVDAENGATITPAAEWLLDNHYVIEEAIQEVRRDFPRKFYRQL
PTMTVGGVTIPRVMALGWLYVAHTHSTVSRENMTALVDGYQTSQTLQIGE
LWALPSIIRFVLIENLRRISIRVERSRRMRQKANEVVDEIIRLNDAEASA
ALLKQVDSLVDDPTFATQFLYRLRNGSQTSGFAVAWLEERLHAAGTDAEN
VMMSEHNRLASGNVTMGNIVKSLREIDDTEWSVWFEEVSHIDKVLREETD
YEILDFGSRNTYRNTIELLARRSPRTEVEVARAAVEMARSDLPAGADENH
RVNVGSVLVGQRRFELEKALGYRPLASQHIVRSMRKFNWLAIAAPVLLIT
AVAMLAVGWFLAKAGMPWYVVTAFLLMFALPASEGATGLFNTLVTFFVKP
FRLVGYEFKNGIPEDARTLVAVPCMLTSRDSVDEMMRNIEVHYLANPHGE
IYFSLVSDWRDAPYEQSDEDLEILDYAKRELAALNSRYAFDGKTRFYLLH
RRRIYNSAEECWMGWERKRGKLHELNMLLRGDKDTTFLGGSNIVPADVKY
VMTLDADTRLMRDAVTKLVGKMHHPINRPKIDPVSGRVVEGYGLLQPRVT
PSLTTGKDASVFQRVFSINRGIDPYVFTVSDVYQDLTSEGTFTGKGLYDV
DAFEAALKGRIEENSILSHDLLEGSFARCALVTDVELVEDFPTRYEVEVS
RQHRWARGDWQLLPFIIDRARGVTAIGRWKMVDNLRRSLTPIAWFFASIL
GWYFMDPLGALIWQILLIFSLFVAPTLSLLSGLVPRSTDIVPQAHFFTIW
SEIRATNAQVALRIVFIADAACMMTDAIVRSLYRLLVSHKQGSIVDYYRQ
MWHAPVVAMLGLLFAALPGDNAFLIGIPFTLLWVLSPAVAWYVSQSAETE
DRLFVSEHVSFELRKIARRTWRYYEAFVTPQENHLPPDNFQETPEPIVAS
RTSPTNIGVYLLSVISARQFGWISFADTLERIENTIQTVEKMEKHRGHLY
NWYHTDTLQTLGPRYVSAVDSGNLAGHLIAVSSACRDWAEAPSAHLQGNL
DGIGDVAGILRETLKALPDNRKTLRPLHRRLEERIIGFSNALASVKREHE
FASIRVINLAVLARDIQKLATNVDHEVKSAQSAEVTRWAQLLVESCEAHI
SDSAIDLTNMEPLRQRLASLRDRSRNLAFSMDFTFLYRKDRRLLSIGYRV
ESKELDEACYDLLASECRLTSLFAIAKGDLPTEHWYRLGRQVVPIGAQGA
LVSWSGSMFEYLMPPLVMQERQGGILNQTNNLIVKEQMNHGRRLGTPWGI
SEAAFNARDHNMNYQYTNFGVPTLGLKRGLGQNAVIAPYASILASQYDPD
GALENLDKLRKLGALGQYGFHDAVDFTPTRVPDGKVCAVVYNYYAHHHGM
SIAAVANVAFDGVLRELFHSDPVIEAAELLLQEKAPREVPVMSAGKEQAD
LLRAEVRSIADPAVRDREVVFLSNGHYSTMLTSTGAGYSKWNGQAISRWK
ADPTDDRWGTFIFLRDTTNGQWWSATAEPRVIEGEKTKTIFTDDKAEFHK
TIGDLQSVVECIVATEHDAEGRRITLLNVGSEDRYIEVTSYMEPVIASED
DDNAHPLFSRMFVQTEIGRRGDVIRAWRNRRSQNEPGTVIAHLAADNAGP
SRPTEFETDRAKFIGRGRSLREAAAFDAGATLSSSDGFTLDPILSLRRTV
RVPAGKKVSVIFWTIAAPSREEVDKAIDRYRHPDAFAHELVHAWTRTQVQ
MRHVGVTSQQAAAFQHLGRYLTYPDMHLRADSETLKTGLASQRALWPLAI
SGDFPIFSLRINDDMDMDIAREALSAHEYLRSRGVIFDLVIVNERAASYA
QDMQHALDHISETQRRINPADGRPHVFSVRRDLMDEETWSALLAASRVVL
HVRNGKIVDQINRAVSLFAASDAAQARLPVPAFPVAEPVEDAGDLDFWNG
FGGFAKNGQEYVVRLNGGQSTPHPWINVISNENFGFHISAEGAGFSWSRN
SRDYQLTPWTNDPVINRPGEAFYVADVETGKLYTPCAALSRDPEAMFETR
HGLGYSILTGVADTLEVELTQTVDREKPVKFSQVIVRNKGSKSRRLKVYA
YVEWVLGNNGQKSAPFILSRHDAGSNAIFASNPYSIDYSARTSFLTLDSE
ASGFTTSRREFIGRFGSAQAPQGIVAGAALSGTTEVDGDPCAALMQEIHL
KPGEERHMTFILGDADNAEEAEALVKDVRQADFLSVLEESKKFWTGFTGQ
LQVSTPDAGFNHMVNNWLPYQALACRILARTAFYQSSGAFGFRDQLQDTL
AFPDLARTQILRAAGRQFPEGDVQHWWLPLTGAGVRTTISDDVVWLAYAI
NQYVSATGDAAILDESIPFLKGPALMPGQHDAFFQPETSERSATLYEHAA
LALDLAIHRTGENGLPLILGGDWNDGMNRVGVGGKGTSVWLGWFLAGALR
DFIEIAEKRGDTDRVGKWASHREKLRHVLETAGWDGSYYRRGYFDDGTPL
GSASSEECQIDSLGQSWSVLSGEGEEGRSRQAMDAVMEHLVDEKTGIIRL
FTPPFSRASHDPGYIKGYPPGVRENGGQYTHAATWVVLALAKQGRAQEAW
NCFKLLNPVNHALDAASSETYRVEPYVVTADVYGEGAYAGRGGWSWYTGS
AGWLYRAAVEGILGITRTDGKLHVSPSLPEDWSGFSIRITLDGKARDIAV
SRKAGTADVSVSVDG
 
 
IndexError
Python 3.6.8: /usr/bin/python3
Wed Nov 27 08:44:18 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8rfg', asym_id = 'A', bs = 'BS03', title = 'Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8rfg', asym_id='A', bs='BS03', title='Structure-function analysis of the cyclic beta-1,2-glucan synthase from Agrobacterium tumefaciens.')
    925                 p=subprocess.Popen(cmd,shell=True,stdout=subprocess.PIPE)
    926                 stdout,stderr=p.communicate()
=>  927                 line     =stdout.decode().splitlines()[0]
    928                 items    =line.split('\t')
    929                 rhea     ='\n'.join(["RHEA:"+r for r in items[2].split(',')])
line = '8rfg\tA\tBGC\t5', stdout = b'', stdout.decode = <built-in method decode of bytes object>, ).splitlines undefined

IndexError: list index out of range
      args = ('list index out of range',)
      with_traceback = <built-in method with_traceback of IndexError object>