Structure of PDB 8e5d Chain A Binding Site BS03

Receptor Information

>8e5d Chain A (length=136) Species: 95486 (Burkholderia cenocepacia) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GSYALGPYQISAPQLPAYNGQTVGTFYYVNDAGGLESKVFSSGGPTPYPN
YANAGHVAGQSALFMRDNGISEGLVFHNNPEGTCGFCVNMTETLLPENAK
MTVVPPEGAIPVKRGATGETKVFTGNSNSPKSPHHH

Ligand information

InChI=1S/Zn/q+2

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Zn

Name

ZINC ION

PDB chain

8e5d Chain A Residue 1501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8e5d Structural basis of sequence-specific cytosine deamination by double-stranded DNA deaminase toxin DddA.
Resolution	2.39 Å
Binding residue (original residue number in PDB)	H1345 C1373 C1376
Binding residue (residue number reindexed from 1)	H56 C84 C87
Annotation score	1

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:8e5d, PDBe:8e5d, PDBj:8e5d
PDBsum	8e5d
PubMed	37460895
UniProt	P0DUH5\|DDDA_BURC1 Double-stranded DNA deaminase toxin A (Gene Name=dddA)

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