Structure of PDB 7ykn Chain A Binding Site BS03

Receptor Information
>7ykn Chain A (length=507) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RYSVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCA
FFAAMQAFADYLSAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQ
YQRPDEYRLLEQMANLRLSGITIGCVDTEHFLLPFAEIPEQFPASKAVLM
EHFYRRMRKRFGYLMTADGKPEGGQWNFDADNRNKLKSPDLLQLPTPLCF
DNPVASIKARIERHRIPSIGQVGESLLWPINRAQALSLLAHFCQICLPNF
GRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRAAQGQ
ISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNG
QTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGI
YIDAIEWVELPNTRGMALFADGGLIATKPYSASGSYINKMSDYCASCAYQ
VKLKSGEKACPLNSLYWRFMLKHRDRMLYKTWDKMTSDSQQAILSTADAY
LSQIESL
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain7ykn Chain A Residue 606 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7ykn The crystal structure of Vibrio cholerae (6-4) photolyase reveals interactions with cofactors and a DNA-binding region.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		M355 R356 C357 I438 Y444 C445 C448 V452 C461
Binding residue
(residue number reindexed from 1)		M354 R355 C356 I437 Y443 C444 C447 V451 C460
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:7ykn, PDBe:7ykn, PDBj:7ykn
PDBsum7ykn
PubMed36528063
UniProtA0A2V4NVF4

[Back to BioLiP]