Structure of PDB 7vws Chain A Binding Site BS03

Receptor Information
>7vws Chain A (length=315) Species: 1931 (Streptomyces sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIVQELDQAGITDSGLRADYITVSRLFREIGRGRYLGRYMFPAAKRPYFD
AFITFVAYVDNLTDDIKHSVEVRARRLDEWERTYLAVAKGPLSRSEQTDA
AVARALVHTLRTWDLPYLRVPEFVDGNRKALTTYEYANDEALDEFLETVT
LLPAVWINQIFEPRSAEAEELCRHTITAFQLLDFIWDLREDLDLGRLYLP
MEHLDRFGVTRADLDRQIGSGHLTDDVRELLRFEIGRAKKHLDAGRGWPQ
SLHPTSRTFMEADIQLHDSMFPQLTKNGYAFFKTAIARTASAIARARKIN
QQAIRGGYRVRAPFQ
Ligand information
Ligand IDAO6
InChIInChI=1S/C16H15NO3/c1-8(18)7-11-9(2)15(19)16(20)13-10-5-3-4-6-12(10)17-14(11)13/h3-6,8,17-18H,7H2,1-2H3/t8-/m1/s1
InChIKeyHADDOKGXXGGODW-MRVPVSSYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[C@@H](O)CC1=C(C)C(=O)C(=O)c2c1[nH]c3ccccc23
CACTVS 3.385C[CH](O)CC1=C(C)C(=O)C(=O)c2c1[nH]c3ccccc23
OpenEye OEToolkits 2.0.6CC1=C(c2c(c3ccccc3[nH]2)C(=O)C1=O)C[C@@H](C)O
OpenEye OEToolkits 2.0.6CC1=C(c2c(c3ccccc3[nH]2)C(=O)C1=O)CC(C)O
FormulaC16 H15 N O3
Name2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione
ChEMBL
DrugBank
ZINC
PDB chain7vws Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7vws Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Resolution1.71 Å
Binding residue
(original residue number in PDB)		P161 I184 F187 Q188 F267 D271
Binding residue
(residue number reindexed from 1)		P153 I176 F179 Q180 F259 D263
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 22:25:16 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7vws', asym_id = 'A', bs = 'BS03', title = 'Structural Basis for the Prenylation Reaction of...ucts Catalyzed by Squalene Synthase-Like Enzymes.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7vws', asym_id='A', bs='BS03', title='Structural Basis for the Prenylation Reaction of...ucts Catalyzed by Squalene Synthase-Like Enzymes.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009058', uniprot = '', pdbid = '7vws', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009058', uniprot='', pdbid='7vws', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>