Structure of PDB 7vd5 Chain A Binding Site BS03

Receptor Information

>7vd5 Chain A (length=334)

VSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDI
DGIREPVAGSLLYGNNIISGAVVPSSNAIGMHFYPIWEAASIDEWLYNGG
PYQLIVLHFLLGVSAYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLV
YPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSL
FSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIF
QYASFNNSRALHFFLALWPVVGIWITSMGISTMAFNLNGFNFNQSVVDSQ
GRVINTWADILNRANLGIEVMHERNAHNFPLDLA

Ligand information

• Ligand ID: FE2
• InChI: InChI=1S/Fe/q+2
• InChIKey: CWYNVVGOOAEACU-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Fe+2]
  CACTVS 3.341: [Fe++]
• Formula: Fe
• Name: FE (II) ION
• DrugBank: DB14510
• PDB chain: 7vd5 Chain A Residue 402

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7vd5 Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
• Resolution: 2.5 Å
• Binding residue (original residue number in PDB): H215 H272
• Binding residue (residue number reindexed from 1): H205 H262
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0009055 electron transfer activity
• GO:0016168 chlorophyll binding
• GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
• GO:0046872 metal ion binding

Biological Process

• GO:0009635 response to herbicide
• GO:0009772 photosynthetic electron transport in photosystem II
• GO:0015979 photosynthesis
• GO:0019684 photosynthesis, light reaction

Cellular Component

• GO:0009523 photosystem II
• GO:0009535 chloroplast thylakoid membrane
• GO:0016020 membrane

External links

• PDB: RCSB:7vd5, PDBe:7vd5, PDBj:7vd5
• PDBsum: 7vd5
• UniProt: A0A679C261