Structure of PDB 7uva Chain A Binding Site BS03

Receptor Information
>7uva Chain A (length=329) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RTFDLEEKLQTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLG
IKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEE
EREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTEST
NAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIP
PTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHA
VYTPTDTLVFGGNFLHSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWY
VLERYVYCITNRSHLTKDFQKESLSMDME
Ligand information
Ligand IDOH0
InChIInChI=1S/C10H19NO4/c1-2-3-4-5-6-9(12)11(15)8-7-10(13)14/h15H,2-8H2,1H3,(H,13,14)
InChIKeyDOYDHAWEPMQVFZ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCC(=O)N(O)CCC(O)=O
OpenEye OEToolkits 2.0.7CCCCCCC(=O)N(CCC(=O)O)O
ACDLabs 12.01O=C(O)CCN(O)C(=O)CCCCCC
FormulaC10 H19 N O4
NameN-heptanoyl-N-hydroxy-beta-alanine
ChEMBL
DrugBank
ZINC
PDB chain7uva Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7uva Structural basis of paralog-specific KDM2A/B nucleosome recognition.
Resolution1.98 Å
Binding residue
(original residue number in PDB)		I144 Y199 L201 T209 H212 Y222 K229 H284 V286 N298
Binding residue
(residue number reindexed from 1)		I109 Y164 L166 T174 H177 Y187 K194 H249 V251 N263
Annotation score1
Enzymatic activity
Enzyme Commision number 1.14.11.27: [histone H3]-dimethyl-L-lysine(36) demethylase.
External links
PDB RCSB:7uva, PDBe:7uva, PDBj:7uva
PDBsum7uva
PubMed36797403
UniProtP59997|KDM2A_MOUSE Lysine-specific demethylase 2A (Gene Name=Kdm2a)

[Back to BioLiP]