Structure of PDB 7uk7 Chain A Binding Site BS03

Receptor Information
>7uk7 Chain A (length=389) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHMLRHNVPVRRDLDQIAADNGFDFHIIDNEIYWDESRAYRFTLRQIEEQ
IEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSL
YGRMDFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRD
ADQYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQQAG
QESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRK
RREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFDGEKPQIAAGES
YVRKPIYSREGGNVTIFDGKNNVVDHADGDYADEPMIYQAFQPLPRFGDS
YTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7uk7 Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7uk7 Escherichia coli YgiC and YjfC Possess Peptide─Spermidine Ligase Activity.
Resolution1.95 Å
Binding residue
(original residue number in PDB)		D103 E116
Binding residue
(residue number reindexed from 1)		D105 E118
Annotation score4
Enzymatic activity
Enzyme Commision number 6.3.1.-
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7uk7, PDBe:7uk7, PDBj:7uk7
PDBsum7uk7
PubMed36745518
UniProtP33222|YJFC_ECOLI Putative acid--amine ligase YjfC (Gene Name=yjfC)

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