Structure of PDB 7pod Chain A Binding Site BS03

Receptor Information
>7pod Chain A (length=273) Species: 171101 (Streptococcus pneumoniae R6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGL
SGYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEV
GKKYYSADGLHFDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSL
LENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAY
DTTPYLSAKTFDDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYAS
DPYWGEKIASVMMKINEKLGGKD
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7pod Chain A Residue 703 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7pod Molecular basis of the final step of cell division in Streptococcus pneumoniae.
Resolution1.5 Å
Binding residue
(original residue number in PDB)		D421 D423 E425
Binding residue
(residue number reindexed from 1)		D15 D17 E19
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.96: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
Gene Ontology
Molecular Function
GO:0004040 amidase activity

View graph for
Molecular Function
External links
PDB RCSB:7pod, PDBe:7pod, PDBj:7pod
PDBsum7pod
PubMed37418323
UniProtP59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase (Gene Name=lytB)

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