Structure of PDB 7nl7 Chain A Binding Site BS03

Receptor Information
>7nl7 Chain A (length=132) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNF
LQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVG
EEDCAEFSGNGWNDDKCNLAKFWICKKSAASC
Ligand information
Ligand IDUH5
InChIInChI=1S/C17H24N4O5/c18-7-4-8-25-17-14(16(24)15(23)13(10-22)26-17)21-9-12(19-20-21)11-5-2-1-3-6-11/h1-3,5-6,9,13-17,22-24H,4,7-8,10,18H2/t13-,14+,15-,16-,17+/m1/s1
InChIKeyXCUIOLRELJNONY-JJTUDDRGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1ccc(cc1)c2cn(nn2)C3C(C(C(OC3OCCCN)CO)O)O
OpenEye OEToolkits 2.0.7c1ccc(cc1)c2cn(nn2)[C@H]3[C@H]([C@@H]([C@H](O[C@@H]3OCCCN)CO)O)O
CACTVS 3.385NCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1n2cc(nn2)c3ccccc3
CACTVS 3.385NCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1n2cc(nn2)c3ccccc3
FormulaC17 H24 N4 O5
Name3-Aminopropyl 2-deoxy-2-(4-phenyl-1,2,3-triazol-1-yl)-alpha-D-mannopyranoside;
(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(3-azanylpropoxy)-2-(hydroxymethyl)-5-(4-phenyl-1,2,3-triazol-1-yl)oxane-3,4-diol
ChEMBL
DrugBank
ZINC
PDB chain7nl7 Chain A Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nl7 Sweet Drugs for Bad Bugs: A Glycomimetic Strategy against the DC-SIGN-Mediated Dissemination of SARS-CoV-2.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
F313 E347 N349 E354 E358 S360 N365
Binding residue
(residue number reindexed from 1)
F61 E95 N97 E102 E106 S108 N113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7nl7, PDBe:7nl7, PDBj:7nl7
PDBsum7nl7
PubMed34652144
UniProtQ9NNX6|CD209_HUMAN CD209 antigen (Gene Name=CD209)

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