Structure of PDB 7mgm Chain A Binding Site BS03

Receptor Information
>7mgm Chain A (length=2274) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVS
KFMKKMFGSIESIIFFEDSITGVRSVEGEVLNLNEKIELKDSIQAQEWLN
ILDTEIKLSVFTQFRDCLGQLKDGTDIEVVVSKYIFQAILLSAQVMWTEL
VEKCLQTNEFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHFN
NVIGQLKNCSTKEEARLLWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYK
FEYIGIPERLIYTPLLLVGFATLTDSLHQKYGGCFFGPAGTGKTETVKAF
GQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLS
AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELP
ENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSK
CSSMNHYHFGLRTLKGVLRNCSPLVSEFGEGEKTVVESLKRVILPSLGDT
DELVFKDELSKIFDSNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ
KTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESL
YGSMLKATLEWRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVE
AMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPATITRCGLLW
FSTDVCSISSKIDHLLNKSYEALFELDKLKDLISDSFDMASLTNIFTCSN
DLVHILGVRTFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKR
SLLYALAGDSTGESQRAFIQTINTYFGHDSQELSDYSTIVILSFSSFCSE
IPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGK
TMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTGLTLLPKS
DIKNLVLFCDQINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIE
RIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA
IFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVR
GVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETV
DKYLPLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIEERFKTFCDEELEV
PMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLK
IVQPKIHRHSNLSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLER
MNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGE
IAKNLHVVFTICDPTNNKSSAMISSPALFNRCIINWMGDWDTKTMSQVAN
NMVDVVPMEFTDFIVPEVNKELVFTEPIQTIRDAVVNILIHFDRNFYQKM
KVGVNPRSPGYFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLK
VNELLDRSISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYF
GHLNERERGDMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGL
DKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEE
GFVKRLENAVRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVEIGDH
EVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITL
TEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSELMVTLNNLKK
EAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFY
GISIGQFLSCFKRVFIKTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMT
MFCLYKFDIESEQYKEAVLTMIGVLSESSDGVPKLTNDDLRYLWDYVTTK
SYISALNWFKNEFFVDEWNIADVVANSENNYFTMASERDVDGTFKLIELA
KASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTY
LHKHVEEHEKFKMFMTCHLTGDKLPAPLLQRTDRVVYEDIPGILDTVKDL
WGSQGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVY
LENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG
SDNLQIVPGVRIPQPLLQQSEEEERARLTAILSNTIEPADSLSSWLQLPR
ESILDYERLQAKEVASSTEQLLQE
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain7mgm Chain A Residue 4103 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7mgm Structural basis for cytoplasmic dynein-1 regulation by Lis1.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		F2047 S2048 F2053 G2077 C2078 G2079 K2080 T2081 E2195 C2220 H2228 R2549 R2552
Binding residue
(residue number reindexed from 1)		F533 S534 F539 G563 C564 G565 K566 T567 E681 C706 H714 R1022 R1025
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008569 minus-end-directed microtubule motor activity
GO:0016887 ATP hydrolysis activity
GO:0045505 dynein intermediate chain binding
GO:0051959 dynein light intermediate chain binding
Biological Process
GO:0007018 microtubule-based movement
Cellular Component
GO:0030286 dynein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7mgm, PDBe:7mgm, PDBj:7mgm
PDBsum7mgm
PubMed34994688
UniProtP36022|DYHC_YEAST Dynein heavy chain, cytoplasmic (Gene Name=DYN1)

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