Structure of PDB 7lm4 Chain A Binding Site BS03

Receptor Information

>7lm4 Chain A (length=183) Species: 641501 (Influenza A virus (A/California/04/2009(H1N1)))

LVPRGSHMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAATCTHLE
VCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDY
KENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYT
LDEESRARIKTRLFTIRQEMASRSLWDSFRQSE

Ligand information

• Ligand ID: Y5V
• InChI: InChI=1S/C21H21N3O5/c1-12-5-3-4-6-14(12)19-23-17(18(26)21(28)24-19)20(27)22-10-9-13-7-8-15(25)16(11-13)29-2/h3-8,11,25-26H,9-10H2,1-2H3,(H,22,27)(H,23,24,28)
• InChIKey: KEGVYPYJMJWBAI-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccc(c(c3)OC)O
  CACTVS 3.385: COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccc1O
  ACDLabs 12.01: c1ccc(c(c1)C2=NC(=C(C(N2)=O)O)C(NCCc3cc(c(cc3)O)OC)=O)C
• Formula: C21 H21 N3 O5
• Name: 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide
• PDB chain: 7lm4 Chain A Residue 203

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7lm4 Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential.
• Resolution: 2.35 Å
• Binding residue (original residue number in PDB): Y24 K34 A37 H41 E80 D108 E119
• Binding residue (residue number reindexed from 1): Y31 K41 A44 H48 E68 D96 E107
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.1.-.-

Gene Ontology

Molecular Function

• GO:0003723 RNA binding

Biological Process

• GO:0039694 viral RNA genome replication

External links

• PDB: RCSB:7lm4, PDBe:7lm4, PDBj:7lm4
• PDBsum: 7lm4
• PubMed: 36603507
• UniProt: C3W5S0