Structure of PDB 7kn8 Chain A Binding Site BS03

Receptor Information
>7kn8 Chain A (length=707) Species: 190485 (Xanthomonas campestris pv. campestris str. ATCC 33913) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PYQWRSVAIGGGGFVTGVLFHPAERGLAYARTDVGGAYRWDAQAQQWTAL
TDWLGADDWNLMGIDAFAVDPADADALYLAAGTYMHERAGNAAVLRSFNR
GRTFERADLPFKLGGNQLGRANGERLAVDPHDGRVLLLGSRDAGLWRSDD
RGAHWAKVASFPDAALAGATARNHVGREQAVGIAFVVFDAASGNTGTPTP
RIYVGVSTEQTSLYVSEDAGRSWAPVAGQPRGLRPSHMAGGSDGHWYLSY
GDQPGPDLMAGGALWKFTPAQGRWREISPIPQPASGDGFGWGAVAVDPQQ
PQVLLASTFRRRTPRDELYRSVDGGKHWAPLLADAVFDHSAAPWTAHATP
HWMGALAIDPFDGNHALFVTGYGIWASRNLQDFAAPQRPLQWWFQDRGLE
ETVPLDLLSPMAGAHLLSALGDIDGFRHDELDRAQLQYAGPRLTNGESID
AAGQAPQWVVRSGTVRDRRNNEIRALYSRDGGKQWTAFASEPPAGQGAGS
IAIGADAAQVVWAPERGGNWRTSDFGAQWQRVDGLPDTAVVMADRVDARR
WYAVDVASGQLYESTDAARSFRATGVQVGSPARDERTRPQLRPDPWRAGV
VYLASPGKGVMRWQDGTLQVLSQPDEARSLGIGKALRAGAPPALYLAGRV
QGVDGVFRSDDGGVQWQRINDDAHRFGRPYSVTGDPRIAGRVYFATGGRG
IFYGDPR
Ligand information
Ligand IDXYS
InChIInChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m1/s1
InChIKeySRBFZHDQGSBBOR-LECHCGJUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)O)O)O)O
CACTVS 3.341O[CH]1CO[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O
CACTVS 3.341O[C@@H]1CO[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04OC1C(O)COC(O)C1O
FormulaC5 H10 O5
Namealpha-D-xylopyranose;
alpha-D-xylose;
D-xylose;
xylose;
XYLOPYRANOSE
ChEMBL
DrugBankDB03389
ZINCZINC000001529214
PDB chain7kn8 Chain C Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7kn8 Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Resolution1.95 Å
Binding residue
(original residue number in PDB)		H218 R510
Binding residue
(residue number reindexed from 1)		H174 R466
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0010411 xyloglucan metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7kn8, PDBe:7kn8, PDBj:7kn8
PDBsum7kn8
PubMed
UniProtQ8P9U5

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