Structure of PDB 7gqu Chain A Binding Site BS03

Receptor Information
>7gqu Chain A (length=419) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FLWPAPNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYG
KSLCFQYPPVYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGSAQSEN
VLTDIKLGKYRIVYVTPEYCSGNMGLLQQLEADIGITLIAVDEAHCISEW
GHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQIT
CTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKM
TQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGM
GINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLN
RHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKAS
LGIMGTEKCCDNCRSRLDH
Ligand information
Ligand IDX1L
InChIInChI=1S/C20H23F2N3O4S/c1-20(21,22)19-23-12-15(18(25-19)29-14-6-4-3-5-7-14)17(26)24-16(13-8-9-13)10-11-30(2,27)28/h3-7,12-13,16H,8-11H2,1-2H3,(H,24,26)
InChIKeyDBNMEVJJGIPVCE-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(F)(F)c1ncc(C(=O)N[C@@H](CC[S](C)(=O)=O)C2CC2)c(Oc3ccccc3)n1
OpenEye OEToolkits 2.0.7CC(c1ncc(c(n1)Oc2ccccc2)C(=O)NC(CCS(=O)(=O)C)C3CC3)(F)F
ACDLabs 12.01FC(C)(F)c1nc(Oc2ccccc2)c(cn1)C(=O)NC(CCS(C)(=O)=O)C1CC1
OpenEye OEToolkits 2.0.7CC(c1ncc(c(n1)Oc2ccccc2)C(=O)N[C@H](CCS(=O)(=O)C)C3CC3)(F)F
CACTVS 3.385CC(F)(F)c1ncc(C(=O)N[CH](CC[S](C)(=O)=O)C2CC2)c(Oc3ccccc3)n1
FormulaC20 H23 F2 N3 O4 S
NameN-[(1S)-1-cyclopropyl-3-(methanesulfonyl)propyl]-2-(1,1-difluoroethyl)-4-phenoxypyrimidine-5-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain7gqu Chain A Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7gqu Chemoproteomic discovery of a covalent allosteric inhibitor of WRN helicase
Resolution1.54 Å
Binding residue
(original residue number in PDB)
V570 A704 A706 C727 M845 E846 Y849 K898 H916 F917
Binding residue
(residue number reindexed from 1)
V44 A178 A180 C201 M319 E320 Y323 K372 H390 F391
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.-.-
5.6.2.4: DNA 3'-5' helicase.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004386 helicase activity
GO:0005524 ATP binding
Biological Process
GO:0006310 DNA recombination

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:7gqu, PDBe:7gqu, PDBj:7gqu
PDBsum7gqu
PubMed38658751
UniProtQ14191|WRN_HUMAN Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN (Gene Name=WRN)

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