Structure of PDB 7d0v Chain A Binding Site BS03

Receptor Information
>7d0v Chain A (length=526) Species: 8656 (Naja atra) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSFKLTILHTNDVHARLEQTSRDSGKCSGEDCYGGVARRATKIRQIRASH
RNVLLLDAGDQYQGTIWFNYFKGREVVHFMNSLRYDAMALGNHEFDNGLN
GLLDPLLKNVKFPILSANIRPKGPIASKISGYILPYKIINVGSEKVGIIG
YTTKETPVLSNPGPYLEFRDEVEELQKHADKLTTLGVNKIIALGHSGFME
DCRIAQKVKGVDVVVGGHTNTFLYTGSPPSNEVAAGNYPFMQLSDDGRQV
PVVQAYAFGKYLGYLNVIFDDKGKVIKASGNPILLNKSIQEDPAVKAEIS
RMKVQLQNYSSQEIGRTIVYLNGTTHACRFHECNLGNLICDAVVYNNLRH
PDDNEWNHVSMCIVNGGGIRSPIDEQANNGIITLEELTAVLPFGGTFDLL
QIKGSTLRQAFEHSVHRHGQGTGELLQVSGIKVVYDLSQKPGKRVVSLNV
LCTECRVPTYVPLEMEKTYKVLLPSFLAAGGDGYYMLKGDSSNHSSGDLD
ISIVGNYIKRMGKVFPAMEGRMVFSA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7d0v Chain A Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7d0v Crystal structure of Taiwan cobra 5'-nucleotidase
Resolution2.175 Å
Binding residue
(original residue number in PDB)		D85 N117 H220 H243
Binding residue
(residue number reindexed from 1)		D60 N92 H195 H218
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.3.5: 5'-nucleotidase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0046872 metal ion binding
Biological Process
GO:0009166 nucleotide catabolic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:7d0v, PDBe:7d0v, PDBj:7d0v
PDBsum7d0v
PubMed
UniProtA0A2I4HXH5|V5NTD_NAJAT Snake venom 5'-nucleotidase (Fragment)

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