Structure of PDB 7bnr Chain A Binding Site BS03

Receptor Information
>7bnr Chain A (length=195) Species: 246197 (Myxococcus xanthus DK 1622) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVLKLPIESIHRDKDAPRTYFDEEKLKELSESIKAQGVLQPILVRKDGDG
YRIIAGERRWRASQAAGLKEVPAIVRDVTEVQAFELALVENLQRADLNPI
EEAEGYKRLVDEFKLTQEQVSVRVGKERSTVANALRLLALPTDVKGMVAD
GSLSMGHARALLGVPRLPELQNLAKQVADKKLSVRDTERLVQQSR
Ligand information
Ligand IDUFQ
InChIInChI=1S/C9H16N3O13P3S/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(23-8)3-22-26(16,17)24-27(18,19)25-28(20,21)29/h1-2,4,6-8,13-14H,3H2,(H,16,17)(H,18,19)(H2,10,11,15)(H2,20,21,29)/t4-,6-,7-,8-/m1/s1
InChIKeyBMMOFBYKCSBIJP-XVFCMESISA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)[C@@H](O)[C@H]2O
CACTVS 3.385NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)[CH](O)[CH]2O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)S)O)O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)S)O)O
FormulaC9 H16 N3 O13 P3 S
NameCytosine 5'-[gamma-thio]triphosphate;
[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid
ChEMBL
DrugBank
ZINC
PDB chain7bnr Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7bnr The CTPase activity of ParB determines the size and dynamics of prokaryotic DNA partition complexes.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
V125 E126 Q129 R130 A131
Binding residue
(residue number reindexed from 1)
V89 E90 Q93 R94 A95
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:7bnr, PDBe:7bnr, PDBj:7bnr
PDBsum7bnr
PubMed34562373
UniProtQ1CVJ4|PARB_MYXXD Chromosome-partitioning protein ParB (Gene Name=parB)

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