Structure of PDB 6xdt Chain A Binding Site BS03
Receptor Information
>6xdt Chain A (length=141) Species:
9606
(Homo sapiens) [
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VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSH
GSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKL
LSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR
Ligand information
Ligand ID
V1M
InChI
InChI=1S/C16H17NO4/c1-11-8-13(19-2)5-7-15(11)21-10-12-4-6-14(17-9-12)16(18)20-3/h4-9H,10H2,1-3H3
InChIKey
UCQHQVIAEYFBHN-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 12.01
Cc1cc(OC)ccc1OCc2ccc(nc2)C(=O)OC
CACTVS 3.385
COC(=O)c1ccc(COc2ccc(OC)cc2C)cn1
OpenEye OEToolkits 2.0.7
Cc1cc(ccc1OCc2ccc(nc2)C(=O)OC)OC
Formula
C16 H17 N O4
Name
methyl 5-[(4-methoxy-2-methylphenoxy)methyl]pyridine-2-carboxylate
ChEMBL
DrugBank
ZINC
PDB chain
6xdt Chain C Residue 203 [
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Receptor-Ligand Complex Structure
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PDB
6xdt
Exploration of Structure-Activity Relationship of Aromatic Aldehydes Bearing Pyridinylmethoxy-Methyl Esters as Novel Antisickling Agents.
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
V1 T134
Binding residue
(residue number reindexed from 1)
V1 T134
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0004601
peroxidase activity
GO:0005344
oxygen carrier activity
GO:0005506
iron ion binding
GO:0005515
protein binding
GO:0019825
oxygen binding
GO:0020037
heme binding
GO:0031720
haptoglobin binding
GO:0043177
organic acid binding
GO:0046872
metal ion binding
Biological Process
GO:0015670
carbon dioxide transport
GO:0015671
oxygen transport
GO:0030185
nitric oxide transport
GO:0042542
response to hydrogen peroxide
GO:0042744
hydrogen peroxide catabolic process
GO:0098869
cellular oxidant detoxification
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0005829
cytosol
GO:0005833
hemoglobin complex
GO:0016020
membrane
GO:0031838
haptoglobin-hemoglobin complex
GO:0070062
extracellular exosome
GO:0071682
endocytic vesicle lumen
GO:0072562
blood microparticle
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6xdt
,
PDBe:6xdt
,
PDBj:6xdt
PDBsum
6xdt
PubMed
33205981
UniProt
P69905
|HBA_HUMAN Hemoglobin subunit alpha (Gene Name=HBA1)
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