Structure of PDB 6vb8 Chain A Binding Site BS03

Receptor Information

>6vb8 Chain A (length=233) Species: 61861 (Canavalia brasiliensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTA
HIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLY
KETNTILSWSFTSKLKSNTNALHFMFNQFSKDQKDLILQGDATTGTEGNL
RLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDS
HPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN

Ligand information

Ligand ID

DBB

InChI

InChI=1S/C4H9NO2/c1-2-3(5)4(6)7/h3H,2,5H2,1H3,(H,6,7)/t3-/m1/s1

InChIKey

QWCKQJZIFLGMSD-GSVOUGTGSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.7.6	CCC(C(=O)O)N
OpenEye OEToolkits 1.7.6	CC[C@H](C(=O)O)N
CACTVS 3.385	CC[CH](N)C(O)=O
CACTVS 3.385	CC[C@@H](N)C(O)=O
ACDLabs 12.01	O=C(O)C(N)CC

Formula

C4 H9 N O2

Name

D-ALPHA-AMINOBUTYRIC ACID

PDB chain

6vb8 Chain A Residue 306 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6vb8 Structural insights into phytohormone interaction to plant lectin ConBr
Resolution	2.2 Å
Binding residue (original residue number in PDB)	S113 N124 A125 H180
Binding residue (residue number reindexed from 1)	S113 N120 A121 H176
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005537	D-mannose binding
GO:0030246	carbohydrate binding
GO:0046872	metal ion binding
GO:0090729	toxin activity

	Biological Process
GO:0035821	modulation of process of another organism

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Molecular Function

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Biological Process

External links

PDB	RCSB:6vb8, PDBe:6vb8, PDBj:6vb8
PDBsum	6vb8
PubMed
UniProt	P55915\|CONA_CANBR Concanavalin-Br

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