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Receptor Information

>6tr4 Chain A (length=506) Species: 935582 (Mediterraneibacter gnavus E1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NWIGDENLTGNAEAPAKDDVVPDKNQFRYQKEELAAFCHFGPNTFNEIEW
GEHYGNQKPSEIFTLKNDFDAETLVKTLKDAGFKKLIVTAKHHDGFCIWD
SEHTEYDVKASGYKNKNGESDILAEISKACTDQNMDMGLYLSPWDIHEPS
YGYKDEHGNPTTPDKDAKDYNEFYNNQLEEILGNPKYGNDGHFVEVWMAG
AKGSGANAQEYDFKKWFKTIQDNEGKAAGYDADCMLFGAEAYTTVRWIGN
ELGIAGKDTWSKSKVDKDKNTINSNKQGNATVGFEDGDQWTVPEADARIT
SGWFWGTKKNTPKTMEELSDMYFNSVGHNATLLLNVPPNNQGTVDKAILD
RVTEFGNNIKATFKTNLAKAEGASVKVSEVRGGAKEYKPGNMIDDNDETY
WATSDGKKSGEILIDLGKETKFDVVSIEEAIQNGQRINNYKVEYRNGDSG
TWTLLEEGKTIGAKRLCRTSETTARQIKITVGTCDGKVPMISEIGVYKST
EDMEKP

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6tr4 Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6tr4 Fucosidases from the human gut symbiont Ruminococcus gnavus.
Resolution	1.45 Å
Binding residue (original residue number in PDB)	S107 T110 D113
Binding residue (residue number reindexed from 1)	S101 T104 D107
Annotation score	1

Enzyme Commision number

3.2.1.187: (Ara-f)3-Hyp beta-L-arabinobiosidase.

	Molecular Function
GO:0004560	alpha-L-fucosidase activity

	Biological Process
GO:0005975	carbohydrate metabolic process

PDB	RCSB:6tr4, PDBe:6tr4, PDBj:6tr4
PDBsum	6tr4
PubMed	32333083
UniProt	A0A6N3BKT0

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Structure of PDB 6tr4 Chain A Binding Site BS03